University of Wisconsin Bioinfo-Service Virtual Center  
 

University of Wisconsin Bioinfo-Service Virtual Center
A virtual center based on BxAF version 4.0 since 2005
 
What's new on this website?
  • Daily Group Tools: A must-have collection of tools for efficient personal daily information management and better teamwork. Tools includes File Sharing, File Storing, Public Discussion Forum, Group Discussion Forum, Group E-mails, Group Tasks, Daily Notes, and more.
Main features:
  1. Unprecedented data management and sharing capability: it is perfect for teamwork and facility usage.
  2. Integrated, instant data analysis no matter using pre-designed programs or your own R scripts.
  3. Unique Express Analysis: one-step to process your data and get annotated gene list!
  4. Allows step-by-step analysis and all steps are seamlessly integrated:
    1. Pre-processing and quality assessment: e.g. RMA, MAS5, dChip or custom methods, over 15 QA-related graphic images generated.
    2. Statistical testing: t-test, F-test, paired t-test, block F-test, standardized rank sum Wilcoson test, fold changes, and more. The multiple testing methods include Benjamini & Hochber step-up FDR, Bonferroni single-step FWER, ...
    3. Gene annotation: Probe, Function, Chromosome, GenBank, LocusLink, Unigene, Pubmed, Gene Ontology, Pathway ...
  5. Integrated Web R Shell allows you to enter your own R scripts.
  6. Batch file uploading and explorer-style on-line file management.
  7. You can download all data files, executed R scripts, logs, generated images, html files, and text files in one zip file!
  • BxAF EzArray: A unique web-based Affymetric data management and analysis system, featuring Easy-to-use, Powerful, and Completely Free for end users!
Main features:
  1. Unprecedented data management and sharing capability: it is perfect for teamwork and facility usage.
  2. Integrated, instant data analysis no matter using pre-designed programs or your own R scripts.
  3. Unique Express Analysis: one-step to process your data and get annotated gene list!
  4. Allows step-by-step analysis and all steps are seamlessly integrated:
    1. Pre-processing and quality assessment: e.g. RMA, MAS5, dChip or custom methods, over 15 QA-related graphic images generated.
    2. Statistical testing: t-test, F-test, paired t-test, block F-test, standardized rank sum Wilcoson test, fold changes, and more. The multiple testing methods include Benjamini & Hochber step-up FDR, Bonferroni single-step FWER, ...
    3. Gene annotation: Probe, Function, Chromosome, GenBank, LocusLink, Unigene, Pubmed, Gene Ontology, Pathway ...
  5. Integrated Web R Shell allows you to enter your own R scripts.
  6. Batch file uploading and explorer-style on-line file management.
  7. You can download all data files, executed R scripts, logs, generated images, html files, and text files in one zip file!
What are these BxAF Modules?
BxAF BioInfoMan: BxAF Protein and DNA Sequence Analysis Module
BxAF DIY DataMan: BxAF Do-It-Yourself Data Management Module
BxAF InvMan: BxAF Inventory Management Module
BxAF LabStorage: BxAF Sample Storage System
BxAF mLIMS: BxAF Lab Murine Information Management System
Group Daily Tools: Daily Tools, e.g. File Sharing, Discussion, Tasks ...
McArdle Sequencing: McArdle Sequencing
How to Get Started - Read BxAF Essentials (PDF format, 218 KB)

First of all, you need to login this website. If you don't have an account yet, create one now (Note: It often takes a few hours for us to approve your account on this website).

After logged in the system, go to any module homepage by selecting an item from the "Modules" menu, or use any integrated BxAF tools, e.g. store temporary files on-line, share files with group members, create group tasks, post discussion topics, ...

General Help:

Web Browser Requirements: This website is designed to be viewed with the latest popular browsers, including Firefox v1.0, Internet Explorer v6.0, Netscape v7.0, and Opera 8.0. Please report to us if you have problems in viewing our webpages or using our web-based tools with these or newer browsers.

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